API Reference
=============

isotools.Transcriptome
----------------------

.. autoclass:: isotools.Transcriptome
   :members:
   :special-members: __getitem__, __len__, __contains__

isotools.Gene
-------------

.. autoclass:: isotools.Gene
   :members:
   
isotools.SegmentGraph
---------------------

.. autoclass:: isotools.SegmentGraph
   :members:

.. autoclass:: isotools.SegGraphNode
   :members:


isotools.plots module
---------------------

.. automodule:: isotools.plots
   :members:
   :undoc-members:

isotools.domains module
-----------------------
.. automodule:: isotools.domains
   :members: import_hmmer_models, add_domains_to_table

constants
---------
.. automodule:: isotools